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Pyruvate kinase inhibitor measurements and effortless data analysis using the MARS data analysis software

Martin Mangold BMG LABTECH 77799 Ortenberg, Germany 02/2022
  • Pyruvate kinase enzyme activity assay using real-time detection of fluorogenic substrate conversion
  • MARS data analysis software enables simple evaluation of IC50, slope and R2
  • EDR feature of the VANTAstarTM avoids signal saturation during the entire measurement period 

Introduction

Enzymes are proteins which can catalyse biochemical reactions. They are particularly important due to their role in the synthesis, modification, and degradation of organic matter. Enzymatic reactions can range from the cleavage of intra-molecular bonds, transfer of electrons, ligation of molecules to the transfer of functional groups. 


Pyruvate kinase is an enzyme involved in energy-supplying glycolysis and ATP synthesis. It catalyses the transfer of a phosphate group from phosphoenolpyruvate to adenosine diphosphate (ADP), yielding pyruvate and ATP. Pyruvate kinase thus is pivotal for the eucaryotic energy metabolism. 
In addition, overexpression of pyruvate kinase is believed to play a role in cancer. Here, elevated levels of the PKM2 isoform of pyruvate kinase are used as a cancer marker and are associated with unfavourable prognosis. Accordingly, the development of pyruvate kinase inhibitors may offer new treatments for various cancers. 


This application note highlights the benefits of BMG LABTECH’s VANTAstarTM microplate reader and MARS data analysis software for the effortless application of a pyruvate kinase activity assay and its kinetic evaluation. This assay can be employed for the screening and identification of pyruvate kinase inhibitors. 

 

Assay Principle

To test for pyruvate kinase inhibitors, kinetic measurements in the presence of increasing concentrations of pyruvate kinase inhibitor were performed. For this purpose, a pyruvate kinase activity assay kit and human recombinant pyruvate kinase were used. This assay is a coupled enzyme assay using two enzymatic reactions (fig. 1). First, pyruvate kinase transfers the phosphate group from phosphoenolpyruvate to ADP, yielding pyruvate and ATP. Pyruvate is then used in a second enzymatic reaction by the enzyme peroxidase. This results in a fluorometric product, proportional to the pyruvate present. If a pyruvate kinase inhibitor is added, the amount of produced pyruvate and accordingly the amount of fluorometric product is reduced, resulting in lower fluorescence signals.

Materials & Methods

  • Black half area 96-well plate (#675076, Greiner)
  • Human recombinant pyruvate kinase isoform M2 (#NATE-0938, Creative Enzymes)
  • Pyruvate kinase activity assay kit (#MAK072, Sigma-Aldrich) Scutellarin (#DML0014-5MG, Sigma-Aldrich)
  • VANTAstar microplate reader (BMG LABTECH)

 

Experimental procedure
Pyruvate kinase was employed at a concentration of 100 pU/mL, the enzyme activity kit was used according to the manufacturer’s instructions. 

1. Assay components were brought to room temperature.
2. 44 µL of 1x assay buffer, 5 µL pyruvate kinase inhibitor solution/DMSO and 1 µL of 10 µU/mL pyruvate kinase were added to wells in a black half area 96-well plate.
3. A reaction master mix, containing 44 µL 1x assay buffer, 2 µL pyruvate kinase substrate mix, 2 µL pyruvate kinase enzyme mix and 2 µL fluorescent peroxidase substrate per sample well, was freshly prepared.
4. 50 µL of the reaction mix were added to each sample well to start the enzymatic reactions.
5. Plates were immediately transferred to the VANTAstar and measured for 13 min.
6. Kinetic data evaluation for pyruvate kinase inhibitors was performed with the MARS data analysis software.

 

Instrument settings

 

Optic settings Fluorescence intensity, plate mode
Filter Ex 540-20
LP 566
Em 590-20
General settings Number of flashes 20
Settling time 0.5 sec
Kinetic settings Number of cycles 38
Cycle time 20 sec
Gain Enhanced Dynamic Range – auto gain
Focal height 7.6 mm

 

 

Results & Discussion

The pyruvate kinase inhibitor assay was established on the VANTAstar microplate reader.  


Measurements were performed employing different known pyruvate kinase inhibitors. Scutellarin, a flavone compound produced by different Lamiaceae of the Scutellaria genus, was chosen as an example to highlight the kinetic evaluation of pyruvate kinase inhibitors. Adding increasing concentrations of Scutellarin (0-25 µM) resulted in a dose-dependent reduction of pyruvate kinase activity (fig. 2), marking Scutellarin as an effective pyruvate kinase inhibitor.

Due to the strong increase in fluorescence signal intensity over time, the Enhanced Dynamic Range (EDR) feature was essential in this process. Where conventional gain adjustment led to signal saturation within seconds, EDR allowed us to capture enzyme kinetic curves over the complete measurement range. EDR ensures flexible gain adjustment throughout kinetic measurements without the need of manual adjustment.


BMG LABTECH’s MARS data analysis software was used to perform the kinetic evaluation of pyruvate kinase inhibitor measurements. Evaluation can be performed directly with the reader measurement files, requiring no further data export or data formatting. The software comes with a multitude of analysis options and available equations. In this case, a non-linear 4-parameter fit of activity curve slopes over the pyruvate kinase inhibitor concentrations was selected to calculate the IC50 values for tested pyruvate kinase inhibitors (fig. 3). To achieve this, pyruvate kinase inhibitor concentrations were assigned to the respective measurement samples, and slopes of the activity curves were used as base for the 4-parameter standard curve calculation. This yielded kinetic parameters like slope, IC50 and R2 as highlighted in figure 3.   

Conclusion

The VANTAstar is an excellent platform for the performance of kinetic assays such as the presented pyruvate kinase inhibitor assay. The EDR feature simplifies assay setup and optimisation circumventing unnecessary repetitions. By using the provided MARS data analysis software, the assay evaluation process can be substantially streamlined. By assigning the single calculation steps required for evaluation to a template, parameters like top, bottom, slope and IC50 can be determined by the click of a button.